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Cornell University
Cornell University is a private research university that provides an exceptional education for undergraduates and graduate and professional students. Cornell's colleges and schools encompass more than 100 fields of study, with locations in Ithaca, New York, New York City and Doha, Qatar. cs.cornell.edu · cornell.edu
To make our library for efficient pangenomics more palatable, I made a little Unix shell. It “cheats” when it sees commands that invoke other pangenomic CLI tools and runs built-in functionality instead. The shell is built around an instruction-based IR that can fluidly intermix shell-like I/O (files and pipes) with efficient in-memory data structures. In a debatably fair comparison, the fake shell runs one shell script 48× faster than running it with sh.
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